3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02792

Details:

PFam ID : PF02792

PFam Domain Description : Mago nashi protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 93

Average sequence length: 129.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02792	A8PXQ3_MALGO_29_91	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02792	C4M4I7_ENTHI_12_153	100

Sequence based PCA Plot of the family - PF02792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=119 Length=8
Motif2 Start=30 Length=8
Motif3 Start=74 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay