3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02790

Details:

PFam ID : PF02790

PFam Domain Description : Cytochrome C oxidase subunit II, transmembrane domain

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 3615

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02790	Q8WEQ8_LAPHA_1_47	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02790	C4NTL6_9BIVA_1_76	100

Sequence based PCA Plot of the family - PF02790 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay