3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02789

Details:

PFam ID : PF02789

PFam Domain Description : Cytosol aminopeptidase family, N-terminal domain

Number of Sequence in 50% Dataset : 421

Number of Sequence in Full Dataset : 1128

Average sequence length: 120.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02789	E5Z0W3_9BACL_34_127	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02789	A6BC87_VIBPA_1_82	99.9

Sequence based PCA Plot of the family - PF02789 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=18
Motif3 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay