3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02787

Details:

PFam ID : PF02787

PFam Domain Description : Carbamoyl-phosphate synthetase large chain, oligomerisation domain

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 2137

Average sequence length: 120.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02787	D8IL11_LACSC_3_209	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02787	B2KDJ0_ELUMP_425_580	100

Sequence based PCA Plot of the family - PF02787 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=87 Length=11
Motif2 Start=123 Length=34
Motif3 Start=3 Length=44

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay