3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02786

Details:

PFam ID : PF02786

PFam Domain Description : Carbamoyl-phosphate synthase L chain, ATP binding domain

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 4915

Average sequence length: 197.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02786	D8IL11_LACSC_3_209	56.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02786	C0NSM2_AJECG_117_217	99.9

Sequence based PCA Plot of the family - PF02786 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=92 Length=23
Motif2 Start=76 Length=8
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay