3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02785

Details:

PFam ID : PF02785

PFam Domain Description : Biotin carboxylase C-terminal domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 2540

Average sequence length: 106.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02785	D4YK92_9MICO_359_498	28.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02785	D4YK92_9MICO_359_498	100

Sequence based PCA Plot of the family - PF02785 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=52 Length=52
Motif2 Start=13 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay