3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02781

Details:

PFam ID : PF02781

PFam Domain Description : Glucose-6-phosphate dehydrogenase, C-terminal domain

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 1043

Average sequence length: 263.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02781	Q4A6M1_MYCS5_527_619	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02781	Q27741_PLAFA_589_891	100

Sequence based PCA Plot of the family - PF02781 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=11
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay