3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02780

Details:

PFam ID : PF02780

PFam Domain Description : Transketolase, C-terminal domain

Number of Sequence in 50% Dataset : 278

Number of Sequence in Full Dataset : 5241

Average sequence length: 117.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02780	Q4A6M1_MYCS5_527_619	53.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02780	F2TWY0_9EUKA_725_799	99.9

Sequence based PCA Plot of the family - PF02780 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=8
Motif2 Start=1 Length=11
Motif3 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay