3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02779

Details:

PFam ID : PF02779

PFam Domain Description : Transketolase, pyrimidine binding domain

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 4680

Average sequence length: 173.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02779	Q4YE25_PLABA_176_269	50.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02779	C0C6W3_9CLOT_1_68	91.7

Sequence based PCA Plot of the family - PF02779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=15 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay