3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02778

Details:

PFam ID : PF02778

PFam Domain Description : tRNA intron endonuclease, N-terminal domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 188

Average sequence length: 66.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02778	D2REQ8_ARCPA_147_212	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02778	A1RXU3_THEPD_1_69	95.1

Sequence based PCA Plot of the family - PF02778 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay