3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02777

Details:

PFam ID : PF02777

PFam Domain Description : Iron/manganese superoxide dismutases, C-terminal domain

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 1799

Average sequence length: 97.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02777	C4PYC0_SCHMA_1_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02777	D2VLW8_NAEGR_127_248	99.9

Sequence based PCA Plot of the family - PF02777 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=1 Length=11
Motif3 Start=70 Length=8
Motif4 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay