3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02776

Details:

PFam ID : PF02776

PFam Domain Description : Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

Number of Sequence in 50% Dataset : 256

Number of Sequence in Full Dataset : 4185

Average sequence length: 169.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02776	C4PYC0_SCHMA_1_80	67.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02776	C9Y7Y2_9BURK_27_153	100

Sequence based PCA Plot of the family - PF02776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=28 Length=8
Motif3 Start=86 Length=11
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay