3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02775

Details:

PFam ID : PF02775

PFam Domain Description : Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Number of Sequence in 50% Dataset : 304

Number of Sequence in Full Dataset : 6251

Average sequence length: 147.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02775	B6V8F5_MUSBA_37_94	83.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02775	E9CXL9_COCPS_399_493	96.5

Sequence based PCA Plot of the family - PF02775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=18
Motif2 Start=64 Length=11
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay