3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02771

Details:

PFam ID : PF02771

PFam Domain Description : Acyl-CoA dehydrogenase, N-terminal domain

Number of Sequence in 50% Dataset : 950

Number of Sequence in Full Dataset : 9633

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02771	E0Y269_9PROT_8_79	87.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02771	D2VKA5_NAEGR_1_40	99.9

Sequence based PCA Plot of the family - PF02771 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=87 Length=8
Motif2 Start=3 Length=14
Motif3 Start=124 Length=17
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay