3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02770

Details:

PFam ID : PF02770

PFam Domain Description : Acyl-CoA dehydrogenase, middle domain

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 7252

Average sequence length: 53.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02770	Q1LQ46_RALME_116_169	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02770	A0YGT7_9GAMM_85_135	93.5

Sequence based PCA Plot of the family - PF02770 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=27
Motif2 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay