3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02769

Details:

PFam ID : PF02769

PFam Domain Description : AIR synthase related protein, C-terminal domain

Number of Sequence in 50% Dataset : 468

Number of Sequence in Full Dataset : 5954

Average sequence length: 157.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02769	C4TWL8_YERKR_1_121	76.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02769	Q0SBF2_RHOSR_347_435	90.2

Sequence based PCA Plot of the family - PF02769 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay