3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02767

Details:

PFam ID : PF02767

PFam Domain Description : DNA polymerase III beta subunit, central domain

Number of Sequence in 50% Dataset : 254

Number of Sequence in Full Dataset : 1238

Average sequence length: 116.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02767	Q4P446_USTMA_381_530	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02767	B4RNS4_NEIG2_130_206	100

Sequence based PCA Plot of the family - PF02767 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=18
Motif2 Start=11 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay