3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02765

Details:

PFam ID : PF02765

PFam Domain Description : Telomeric single stranded DNA binding POT1/CDC13

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 161

Average sequence length: 138.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02765	Q4P446_USTMA_381_530	78.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02765	B7XHB7_ENTBH_76_234	93.7

Sequence based PCA Plot of the family - PF02765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay