3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02762

Details:

PFam ID : PF02762

PFam Domain Description : CBL proto-oncogene N-terminus, SH2-like domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 23

Average sequence length: 79.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02762	Q4T8G1_TETNG_1_63	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02762	Q5TRN9_ANOGA_249_334	100

Sequence based PCA Plot of the family - PF02762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay