3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02754

Details:

PFam ID : PF02754

PFam Domain Description : Cysteine-rich domain

Number of Sequence in 50% Dataset : 318

Number of Sequence in Full Dataset : 4219

Average sequence length: 86.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02754	Q8NKV4_ACIAM_314_426	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02754	E1YFU3_9DELT_3_64	99.1

Sequence based PCA Plot of the family - PF02754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=24
Motif2 Start=39 Length=8
Motif3 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay