3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02751

Details:

PFam ID : PF02751

PFam Domain Description : Transcription initiation factor IIA, gamma subunit

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 108

Average sequence length: 51.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02751	E1ZAB9_9CHLO_52_83	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02751	E1ZAB9_9CHLO_52_83	100

Sequence based PCA Plot of the family - PF02751 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=17
Motif2 Start=1 Length=8
Motif3 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay