3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02749

Details:

PFam ID : PF02749

PFam Domain Description : Quinolinate phosphoribosyl transferase, N-terminal domain

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 1312

Average sequence length: 88.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02749	D3M4Z7_9ACTO_49_178	77.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02749	D7DRS1_METV3_18_116	100

Sequence based PCA Plot of the family - PF02749 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=36 Length=8
Motif4 Start=109 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay