3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02748

Details:

PFam ID : PF02748

PFam Domain Description : Aspartate carbamoyltransferase regulatory chain, metal binding domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 320

Average sequence length: 50.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02748	D7BP90_ARCHD_318_359	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02748	E9SBS7_RUMAL_325_363	99.6

Sequence based PCA Plot of the family - PF02748 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=17
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay