3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02746

Details:

PFam ID : PF02746

PFam Domain Description : Mandelate racemase / muconate lactonizing enzyme, N-terminal domain

Number of Sequence in 50% Dataset : 325

Number of Sequence in Full Dataset : 2233

Average sequence length: 112.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02746	D0FZQ2_9EURY_1_154	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02746	E3CZS2_9BACT_38_177	100

Sequence based PCA Plot of the family - PF02746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=73 Length=8
Motif2 Start=12 Length=11
Motif3 Start=118 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay