3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02744

Details:

PFam ID : PF02744

PFam Domain Description : Galactose-1-phosphate uridyl transferase, C-terminal domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 670

Average sequence length: 172.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02744	E3GBM3_ENTCS_135_187	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02744	E5L9F1_BACOL_181_239	64

Sequence based PCA Plot of the family - PF02744 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=54 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay