3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02743

Details:

PFam ID : PF02743

PFam Domain Description : Cache domain

Number of Sequence in 50% Dataset : 971

Number of Sequence in Full Dataset : 2501

Average sequence length: 77.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02743	E3GBM3_ENTCS_135_187	62.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02743	F2TVG7_9EUKA_390_441	100

Sequence based PCA Plot of the family - PF02743 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=48 Length=8
Motif2 Start=87 Length=19
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay