3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02742

Details:

PFam ID : PF02742

PFam Domain Description : Iron only hydrogenase large subunit, C-terminal domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 973

Average sequence length: 66.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02742	D3A997_9CLOT_1_48	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02742	Q8TYW6_METKA_71_143	100

Sequence based PCA Plot of the family - PF02742 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay