3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02741

Details:

PFam ID : PF02741

PFam Domain Description : FTR, proximal lobe

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 144

Average sequence length: 142.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02741	C3YVG5_BRAFL_74_117	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02741	Q3LUH7_9BACT_133_187	97.2

Sequence based PCA Plot of the family - PF02741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay