3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02739

Details:

PFam ID : PF02739

PFam Domain Description : 5'-3' exonuclease, N-terminal resolvase-like domain

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 1468

Average sequence length: 163.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02739	Q8LTT5_9CAUD_104_223	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02739	E1ZE58_9CHLO_7_210	100

Sequence based PCA Plot of the family - PF02739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=11
Motif2 Start=13 Length=8
Motif3 Start=160 Length=14
Motif4 Start=136 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay