3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02738

Details:

PFam ID : PF02738

PFam Domain Description : Molybdopterin-binding domain of aldehyde dehydrogenase

Number of Sequence in 50% Dataset : 564

Number of Sequence in Full Dataset : 3992

Average sequence length: 338.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02738	Q6LGQ9_PHOPR_24_85	68.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02738	B9F6G9_ORYSJ_37_89	100

Sequence based PCA Plot of the family - PF02738 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=11
Motif2 Start=33 Length=8
Motif3 Start=45 Length=11
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay