3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02737

Details:

PFam ID : PF02737

PFam Domain Description : 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

Number of Sequence in 50% Dataset : 302

Number of Sequence in Full Dataset : 2806

Average sequence length: 176.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02737	E0QBI0_CAMCO_3_97	86.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02737	B4BN01_9BACI_7_86	100

Sequence based PCA Plot of the family - PF02737 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=90 Length=11
Motif2 Start=115 Length=35
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay