3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02734

Details:

PFam ID : PF02734

PFam Domain Description : DAK2 domain

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 1193

Average sequence length: 166.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02734	D1Y433_9BACT_26_197	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02734	D3F1F7_CONWI_34_225	100

Sequence based PCA Plot of the family - PF02734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=44 Length=8
Motif3 Start=1 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay