3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02733

Details:

PFam ID : PF02733

PFam Domain Description : Dak1 domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 734

Average sequence length: 301.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02733	D1Y433_9BACT_26_197	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02733	F0ZM09_DICPU_16_352	100

Sequence based PCA Plot of the family - PF02733 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=91 Length=8
Motif2 Start=263 Length=20
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay