3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02732

Details:

PFam ID : PF02732

PFam Domain Description : ERCC4 domain

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 364

Average sequence length: 150.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02732	Q5K9S0_CRYNE_154_413	63.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02732	F2UDF5_9EUKA_263_481	79

Sequence based PCA Plot of the family - PF02732 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=175 Length=8
Motif3 Start=131 Length=8
Motif4 Start=145 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay