3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02730

Details:

PFam ID : PF02730

PFam Domain Description : Aldehyde ferredoxin oxidoreductase, N-terminal domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 546

Average sequence length: 202.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02730	B0X9C3_CULQU_1_45	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02730	E0SQV4_IGNAA_1_230	100

Sequence based PCA Plot of the family - PF02730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=91 Length=11
Motif2 Start=148 Length=8
Motif3 Start=2 Length=8
Motif4 Start=168 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay