3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02729

Details:

PFam ID : PF02729

PFam Domain Description : Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 2334

Average sequence length: 141.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02729	B0X9C3_CULQU_1_45	61.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02729	Q08Q32_STIAD_2_161	99.9

Sequence based PCA Plot of the family - PF02729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=8
Motif3 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay