3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02728

Details:

PFam ID : PF02728

PFam Domain Description : Copper amine oxidase, N3 domain

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 306

Average sequence length: 99.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02728	A0YBP0_9GAMM_93_198	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02728	A0YBP0_9GAMM_93_198	88

Sequence based PCA Plot of the family - PF02728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay