3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02727

Details:

PFam ID : PF02727

PFam Domain Description : Copper amine oxidase, N2 domain

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 341

Average sequence length: 86.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02727	Q5ZER5_PPRV_10_174	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02727	B9RSR0_RICCO_17_89	100

Sequence based PCA Plot of the family - PF02727 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=47 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay