3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02722

Details:

PFam ID : PF02722

PFam Domain Description : Major Outer Sheath Protein C-terminal region

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 56

Average sequence length: 165.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02722	D7RN76_TREDE_374_574	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02722	Q68KF6_9SPIO_364_607	100

Sequence based PCA Plot of the family - PF02722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=159 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay