3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02721

Details:

PFam ID : PF02721

PFam Domain Description : Domain of unknown function DUF223

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 134

Average sequence length: 87.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02721	B9G544_ORYSJ_54_152	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02721	Q9ZQM7_ARATH_383_491	97.7

Sequence based PCA Plot of the family - PF02721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=11 Length=8
Motif3 Start=53 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay