3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02718

Details:

PFam ID : PF02718

PFam Domain Description : Herpesvirus UL31-like protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 47

Average sequence length: 255.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02718	O56865_FHV1_5_124	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02718	UL31_EHV2_27_305	100

Sequence based PCA Plot of the family - PF02718 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=112 Length=8
Motif3 Start=135 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay