3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02714

Details:

PFam ID : PF02714

PFam Domain Description : Domain of unknown function DUF221

Number of Sequence in 50% Dataset : 203

Number of Sequence in Full Dataset : 607

Average sequence length: 285.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02714	C9SXP2_VERA1_378_433	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02714	B8A969_ORYSI_300_446	100

Sequence based PCA Plot of the family - PF02714 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=61 Length=8
Motif3 Start=34 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay