3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02709

Details:

PFam ID : PF02709

PFam Domain Description : N-terminal domain of galactosyltransferase

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 424

Average sequence length: 75.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02709	A8QVU6_9SPIO_96_238	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02709	A6E9I2_9SPHI_106_197	100

Sequence based PCA Plot of the family - PF02709 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=87 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay