3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02707

Details:

PFam ID : PF02707

PFam Domain Description : Major Outer Sheath Protein N-terminal region

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 65

Average sequence length: 133.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02707	A8QVU6_9SPIO_96_238	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02707	B2S1V9_TREPS_97_319	100

Sequence based PCA Plot of the family - PF02707 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay