3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02706

Details:

PFam ID : PF02706

PFam Domain Description : Chain length determinant protein

Number of Sequence in 50% Dataset : 1182

Number of Sequence in Full Dataset : 2390

Average sequence length: 182.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02706	A7NQ69_ROSCS_5_82	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02706	A5PAR0_9SPHN_1_299	99.8

Sequence based PCA Plot of the family - PF02706 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=90 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay