3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02705

Details:

PFam ID : PF02705

PFam Domain Description : K+ potassium transporter

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 739

Average sequence length: 470.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02705	B8AG09_ORYSI_1_172	55.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02705	E6PQR5_9ZZZZ_1_87	100

Sequence based PCA Plot of the family - PF02705 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=11
Motif2 Start=189 Length=8
Motif3 Start=108 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay