3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02704

Details:

PFam ID : PF02704

PFam Domain Description : Gibberellin regulated protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 139

Average sequence length: 59.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02704	E118_ADET1_72_161	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02704	Q84XN4_GOSBA_1_40	92.0

Sequence based PCA Plot of the family - PF02704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay