3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02702

Details:

PFam ID : PF02702

PFam Domain Description : Osmosensitive K+ channel His kinase sensor domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 419

Average sequence length: 205.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02702	B2LUU0_ORYSI_1_31	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02702	B6AQ84_9BACT_21_231	100

Sequence based PCA Plot of the family - PF02702 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=195 Length=11
Motif2 Start=84 Length=17
Motif3 Start=102 Length=8
Motif4 Start=3 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay