3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02701

Details:

PFam ID : PF02701

PFam Domain Description : Dof domain, zinc finger

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 211

Average sequence length: 59.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02701	B2LUU0_ORYSI_1_31	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02701	F2E190_HORVD_114_163	96.6

Sequence based PCA Plot of the family - PF02701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=8
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay