3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02698

Details:

PFam ID : PF02698

PFam Domain Description : DUF218 domain

Number of Sequence in 50% Dataset : 440

Number of Sequence in Full Dataset : 1868

Average sequence length: 153.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02698	A7I935_METB6_7_64	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02698	A2PQ78_VIBCH_78_185	100

Sequence based PCA Plot of the family - PF02698 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=151 Length=8
Motif2 Start=59 Length=8
Motif3 Start=17 Length=8
Motif4 Start=99 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay